Additional Campus Affiliations
Professor, Physics
Professor, Carl R. Woese Institute for Genomic Biology
Founder Professor, Physics
Professor, Statistics
External Links
Recent Publications
Basu, A., Bobrovnikov, D. G., Qureshi, Z., Kayikcioglu, T., Ngo, T. T. M., Ranjan, A., Eustermann, S., Cieza, B., Morgan, M. T., Hejna, M., Rube, H. T., Hopfner, K-P., Wolberger, C., Song, J. S., & Ha, T. (2021). Measuring DNA mechanics on the genome scale. Nature, 589(7842), 462-467. https://doi.org/10.1038/s41586-020-03052-3
Bulut-Karslioglu, A., Jin, H., Kim, Y. K., Cho, B., Guzman-Ayala, M., Williamson, A. J. K., Hejna, M., Stötzel, M., Whetton, A. D., Song, J. S., & Ramalho-Santos, M. (2021). Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells. Nature communications, 12(1), [4859]. https://doi.org/10.1038/s41467-021-25088-3
Finnegan, A. I., Kim, S., Jin, H., Gapinske, M., Woods, W. S., Perez-Pinera, P., & Song, J. S. (2021). Epigenetic engineering of yeast reveals dynamic molecular adaptation to methylation stress and genetic modulators of specific DNMT3 family members. Nucleic acids research, 48(8), 4081-4099. https://doi.org/10.1093/NAR/GKAA161
Leistico, J. R., Saini, P., Futtner, C. R., Hejna, M., Omura, Y., Soni, P. N., Sandlesh, P., Milad, M., Wei, J. J., Bulun, S., Parker, J. B., Barish, G. D., Song, J. S., & Chakravarti, D. (2021). Epigenomic tensor predicts disease subtypes and reveals constrained tumor evolution. Cell Reports, 34(13), [108927]. https://doi.org/10.1016/j.celrep.2021.108927
Luu, A. M., Leistico, J. R., Miller, T., Kim, S., & Song, J. S. (2021). Predicting TCR-Epitope Binding Specificity Using Deep Metric Learning and Multimodal Learning. Genes, 12(4), NA. [572]. https://doi.org/10.3390/genes12040572